Have you tried it with the internal ir emitter? You need to activate it first under settings/development/preview features and then assign it to the matrix remote entity.
I enabled the feature, restarted the dock and assigned the remote as the output device for the matrix. Sadly the behavior didn’t change.
2 observations:
When I check the IR signals with my phone camera, the dock and puck only emit a light when a action is called. The light of the dongle is always on.
The events seem to be queud up when I select the remote as output, press a button and switch back to the dock as output, the matrix reacts (when I immediately do the magic dongle wiggling)
When I select the remote as the emitter, the matrix can’t be controlled at all.
When I change back to the dock, the behavior is back to before (dongle works when moved).
When I do it fast I can sometimes still trigger the action by wiggling the dongle.
I assume something is off with the matrix and will find another universal remote to try. But I would love an explanation what might be the issue here to rule out a hardware failure.